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__NOTOC__
=Gene=
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!align=left  |Gene Name
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PHOTOSENSITIVITY 1
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!align=left  |Gene Symbol
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SE1
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!align=left  |Gene Type
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CDS (Protein coding)
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!align=left  |Genus species
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Oryza sativa (Rice)
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!align=left  |Description
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Photoperiod sensitivity. Related to heading date and maturity in rice. Strong photoperiodic sensitivity is dominant over insensitivity. 
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!align=left  |Has Phenotype (YES/NO)
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yes
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!align=left  |Synonym(s)
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Fl; Lm; Hd1; Se1; K; Photoperiod-sensitivity-1; Rs; Lf; Fl1; Flowering date-1, OsHD1
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!align=left  |Sequence locus ID
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TIGR Locus ID: LOC_Os06g16370 [http://rice.plantbiology.msu.edu/cgi-bin/gbrowse/rice/?name=LOC_Os06g16370 TIGR] [http://www.gramene.org/Oryza_sativa/geneview?gene=LOC_Os06g16370 Gramene]<br/>IRGSP Locus ID: [http://rapdb.lab.nig.ac.jp/cgi-bin/gbrowse/IRGSP_40/?name=Os06g0275000 Os06g0275000]
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!align=left  |GenBank Nucleotide(s)
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AB041837 [http://www.ncbi.nlm.nih.gov/entrez/viewer.fcgi?db=nuccore&val=AB041837 NCBI] [http://www.gramene.org/db/markers/marker_view?marker_name=AB041837&action=marker_search Gramene]<br/> AP003044 [http://www.ncbi.nlm.nih.gov/entrez/viewer.fcgi?db=nuccore&val=AP003044 NCBI] [http://www.gramene.org/db/markers/marker_view?marker_name=AP003044&action=marker_search Gramene]<br/> AB041838 [http://www.ncbi.nlm.nih.gov/entrez/viewer.fcgi?db=nuccore&val=AB041838 NCBI] [http://www.gramene.org/db/markers/marker_view?marker_name=AB041838&action=marker_search Gramene]<br/> AB041841 [http://www.ncbi.nlm.nih.gov/entrez/viewer.fcgi?db=nuccore&val=AB041841 NCBI] [http://www.gramene.org/db/markers/marker_view?marker_name=AB041841&action=marker_search Gramene]<br/> AB041842 [http://www.ncbi.nlm.nih.gov/entrez/viewer.fcgi?db=nuccore&val=AB041842 NCBI] [http://www.gramene.org/db/markers/marker_view?marker_name=AB041842&action=marker_search Gramene]<br/> AB041839 [http://www.ncbi.nlm.nih.gov/entrez/viewer.fcgi?db=nuccore&val=AB041839 NCBI] [http://www.gramene.org/db/markers/marker_view?marker_name=AB041839&action=marker_search Gramene]<br/> AB041840 [http://www.ncbi.nlm.nih.gov/entrez/viewer.fcgi?db=nuccore&val=AB041840 NCBI] [http://www.gramene.org/db/markers/marker_view?marker_name=AB041840&action=marker_search Gramene]
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!align=left  |Uniprot protein(s)
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Q9FRZ7 [http://us.expasy.org/cgi-bin/niceprot.pl?Q9FRZ7 Uniprot] [http://www.gramene.org/db/protein/protein_search?gene_product_id=79097 Gramene]<br/> Q9FRZ6 [http://us.expasy.org/cgi-bin/niceprot.pl?Q9FRZ6 Uniprot] [http://www.gramene.org/db/protein/protein_search?gene_product_id=79098 Gramene]<br/> Q9FDX8 [http://us.expasy.org/cgi-bin/niceprot.pl?Q9FDX8 Uniprot] [http://www.gramene.org/db/protein/protein_search?gene_product_id=78610 Gramene]<br/> Q9FE92 [http://us.expasy.org/cgi-bin/niceprot.pl?Q9FE92 Uniprot] [http://www.gramene.org/db/protein/protein_search?gene_product_id=78578 Gramene]
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!align=left  |Function(s)
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|-
!align=left  |Cellular Location(s)
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nucleus (3857)

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= CMAP =
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    !|Map Set!!Map Type!!Linkage Group/CHR!!Map Units!!Start Position!!Stop Position!!Source!!External Link
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Gramene Annotated Nipponbare Sequence 2006
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Sequence
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Chr. 6
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bp
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9335377
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9337570
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Gramene
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[http://www.gramene.org/Oryza_sativa_japonica/contigview?chr=6&vc_start=9335367&vc_end=9337580&highlight=Fl1 View in Genome Browser]
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Hokkaido Morphological 2000
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Genetic
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6
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cM
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67
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67
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Gramene
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[http://www.gramene.org/db/cmap/view_feature_on_map?feature_acc=morph-2000-6-20&start=57&stop=77&highlight_by=feature_acc View Comparative Map]
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JRGP RFLP 2000
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Genetic
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6
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cM
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54.3
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54.9
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Gramene
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[http://www.gramene.org/db/cmap/view_feature_on_map?feature_acc=jrgp-2000-6-ip21&start=44.3&stop=64.9&highlight_by=feature_acc View Comparative Map]

    
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= Cross References =
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    !|Cross References
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[http://www.gramene.org/db/genes/search_gene?acc=GR:0060860 Gramene:GR:0060860]
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[http://www.shigen.nig.ac.jp/rice/oryzabase/gateway/gatewayAction.do?target=symbol&id=760 Oryzabase:760]

    
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= Publications =
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    !|Publications
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Hoshino-Y., On the inheritance of the flowering time in peas and rice, J. Col. Agr. Tohoku Imp. Univ. Sapporo., 1915, 6, pp. 229-288, [http://www.gramene.org/db/literature/pub_search?ref_id=9693 Gramene Literature]
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Yamaguchi-Y., Kreuzungsuntersuchungen an Reispflanzen. II. Ueber die zweite (S-M-) Koppelungsgruppe mit besonderer BeruREDACTEDNcksichtigung ihrer korre'ativen Beziehung zur BluREDACTEDNtezeit, VorlaREDACTEDNufige Mitteilung. Ber. Ohara. Inst. f. Landw. Forsch. 3, (No source provided), 1927, (No volume provided), pp. 319-330, [http://www.gramene.org/db/literature/pub_search?ref_id=6425 Gramene Literature]
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Yamaguchi-Y., Neuere genetische Untersuchungen uREDACTEDNber die Reispflanze. Zeitschr. f. ind. Abst. u. Vererb. 45, (No source provided), 1927, (No volume provided), pp. 105-122, [http://www.gramene.org/db/literature/pub_search?ref_id=6426 Gramene Literature]
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Jones-J-W.Jones-J-W.., Inheritance of earliness and other agronomic characters in rice, J. Agri. Res., 1928, 36, pp. 581-601, [http://www.gramene.org/db/literature/pub_search?ref_id=10425 Gramene Literature]
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Yamaguchi-Y., Kreuzungsuntersuchungen an Reispflanzen. Ill. Genetik der Farbeigenschaften verschiedener Pflanzenteile, des Wuchshabitus und der Ausschusszeiten. (Zugleich ein Beitrag zur Kenntnis der Koppelungsgruppe beim Reis), Ber Ohara Instit. f. land. Forsch., 1931, 5(1), pp. 1-51, [http://www.gramene.org/db/literature/pub_search?ref_id=10546 Gramene Literature]
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Jones-J-W, Adair-C-R, Beachell-H-M, Davis-L-L., Inheritance of earliness and length of kernel in rice, J. Amer. Soc. Argon., 1935, 27, pp. 910-921, [http://www.gramene.org/db/literature/pub_search?ref_id=9682 Gramene Literature]
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Jodon-N-E., Inheritance and linkage relationships of a chlorophyll mutation in rice, J Amer Soc Agron, 1940, 32(5), pp. 342-346, [http://www.gramene.org/db/literature/pub_search?ref_id=1791 Gramene Literature]
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Chandraratna-M-F., Genetics and Breeding of Rice, Genetics and Breeding of Rice. Chandraratna, M. and F. Longmans eds., London., 1952, (No volume provided), pp. 180-214, [http://www.gramene.org/db/literature/pub_search?ref_id=10891 Gramene Literature]
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Chandraratna-M-F., A gene for photoperiod sensitivity in rice linked with apiculus colour, Nature, 1953, 171, pp. 1162-, [http://www.gramene.org/db/literature/pub_search?ref_id=10110 Gramene Literature]
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Fuke-Y., Genetic studies on the photoperiodic reaction in the rice plant, Bull. Nat. Inst. Agri. Sci. Series, 1955, D5, pp. 72-91, [http://www.gramene.org/db/literature/pub_search?ref_id=10845 Gramene Literature]
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Chandraratna-M-F., Genetics of photoperiod sensitivity in rice, Journal of genetics, 1955, 53(2), pp. 215-223, [http://www.gramene.org/db/literature/pub_search?ref_id=479 Gramene Literature]
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Fuke-Y., The linkage of genes controlling heading time of the rice plant, Bull. Nat. Inst. Agri. Sci. Series, 1955, D5, pp. 92-103, [http://www.gramene.org/db/literature/pub_search?ref_id=10846 Gramene Literature]
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Kudo-M., Genetical and breeding studies on physiological and ecological characters in hybrids between ecological groups of rice, Bull Nat Inst Agr Sci Ser, 1968, D19, pp. 1-84, [http://www.gramene.org/db/literature/pub_search?ref_id=2258 Gramene Literature]
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Chang-T-T, Li-C-C, Vergara-B-S., Component analysis of duration from seeding to heading in rice by the basic vegetative phase and photoperiod-sensitive phase, Euphytica, 1969, 18(1), pp. 79-91, [http://www.gramene.org/db/literature/pub_search?ref_id=5541 Gramene Literature]
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Yokoo-M, Fujimaki-H., Tight linkage of blast-resistance with late maturity observed in different Indica varieties of rice, Japan. J. Breed., 1971, 21, pp. 35-39, [http://www.gramene.org/db/literature/pub_search?ref_id=10248 Gramene Literature]
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Yokoo-M, Kikuchi-F., Multiple allelism of locus controlling heading time of rice detected using the close linkage with blast-resistance, Japanese Journal of Breeding, 1977, 27(2), pp. 123-130, [http://www.gramene.org/db/literature/pub_search?ref_id=5161 Gramene Literature]
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Yokoo-M, Kikuchi-F., Genetic analysis for heading time in rice by the aid of the linkage with blast resistance, Japanese Journal of Breeding, 1978, 28(1), pp. 49-55, [http://www.gramene.org/db/literature/pub_search?ref_id=5162 Gramene Literature]
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Yokoo-M, Kikuchi-F, Nakane-A, Fujimaki-H., Genetic analyses of heading time in rice through its close linkage with blast resistance, Bull. Nat. Inst. Agri. Sci.,, 1980, Series D 31, pp. 95-126, [http://www.gramene.org/db/literature/pub_search?ref_id=10859 Gramene Literature]
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Yokoo-M, Kikuchi-F., Monogenic control of basic vegetative phase and photoperiod-sensitive phase in rice, Japanese Journal of Breeding, 1982, 32(1), pp. 1-8, [http://www.gramene.org/db/literature/pub_search?ref_id=5163 Gramene Literature]
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Vergara-B-S, Chang- T-T., The flowering response of the rice plant to photoperiod ? A review of the literature, IRRI. Los BaREDACTEDos, Philippines, 1985, (No volume provided), pp. 61-, [http://www.gramene.org/db/literature/pub_search?ref_id=10974 Gramene Literature]
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Kinoshita-T, Maekawa-M., Inheritance of purple leaf color found in Indica rice -Genetical studies on rice plant, XCIV, J Fac Agr Hokkaido Univ, 1986, 62(4), pp. 453-466, [http://www.gramene.org/db/literature/pub_search?ref_id=5700 Gramene Literature]
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Poonyarit-M, Mackill-D-J, Vergara-B-S., Two genes affecting photoperiod sensitivity in rice, RGN, 1987, 4, pp. 87-89, [http://www.gramene.org/db/literature/pub_search?ref_id=5858 Gramene Literature]
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Oosumi-T, Miyazaki-A, Uchimiya-H, Kikuchi-F, Yokoo-M., Analysis of glucose phosphate isomerase in near-isogenic lines and cultivars of rice (Oryza sativa L.), Bot Mag Tokyo, 1989, 102(1089), pp. 282-289, [http://www.gramene.org/db/literature/pub_search?ref_id=3337 Gramene Literature]
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Poonyarit-M, Mackill-D-J, Vergara-B-S., Genetics and photoperiod sensitivity and critical daylength in rice, Crop Science, 1989, 28(4), pp. 647-652, [http://www.gramene.org/db/literature/pub_search?ref_id=3480 Gramene Literature]
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Salam-M-A, Mackill-D-J, Glaszmann-J-C., Linkage between Pgi-2 and photoperiod sensitivity, Rice Genetics Newsletter, 1990, 7, pp. 130-132, [http://www.gramene.org/db/literature/pub_search?ref_id=3800 Gramene Literature]
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Okumoto-T, Tanisaka-T, Yamagata-H., Heading-time genes of the rice varieties grown in south-west-warm region in Japan, Japan J Breed, 1991, 41(1), pp. 135-152, [http://www.gramene.org/db/literature/pub_search?ref_id=5848 Gramene Literature]
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Okumoto-T, Aizawa-H, Tanisaka-T, Yamagata-H., Identification of the chromosome carrying the late-heading gene, E1, Japan J Breed, 1991, 41(Suppl. 1), pp. 334-335, [http://www.gramene.org/db/literature/pub_search?ref_id=5849 Gramene Literature]
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Tsai-K-H., Multiple alleles detected at locus sd-1, Rice Genetics Newsletter, 1991, 8, pp. 112-113, [http://www.gramene.org/db/literature/pub_search?ref_id=4596 Gramene Literature]
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Okumoto-T, Yoshimura-A, Tanisaka-T, Yamagata-H., Analysis of a rice variety Taichung 65 and its isogenic early-heading lines for late-heading genes E1, E2 and E3, Japanese Journal of Breeding, 1992, 42, pp. 415-429, [http://www.gramene.org/db/literature/pub_search?ref_id=3301 Gramene Literature]
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Fukuchi-A, Suzuki-Y, Hirochika-H, Kikuchi-F., Linkage relations between the photoperiod sensitivity gene Se-1 and two other genes, Pi-zt and Pgi-2, Rice Genetics Newsletter, 1992, 9, pp. 47-50, [http://www.gramene.org/db/literature/pub_search?ref_id=1035 Gramene Literature]
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Mackill-D-J, Salam-M-A, Wang-Z-Y, Tanksley-S-D., A major photoperiod-sensitivity gene tagged with RFLP and isozyme markers in rice, Theoretical and applied genetics, 1993, 85, pp. 536-540, [http://www.gramene.org/db/literature/pub_search?ref_id=2565 Gramene Literature]
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Ohshima-I, Kikuchi-F, Watanabe-Y, Asahi-C., Genetic analysis of heading time in a cross between two Indica varieties with inhibitor genes for photoperiod sensitivity, Japanese Journal of Breeding, 1993, 43, pp. 101-106, [http://www.gramene.org/db/literature/pub_search?ref_id=3264 Gramene Literature]
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Ohshima-I, Odaka-K, Morooka-Y, Nomura-K, Kikuchi-F, Maruyama-K, Kato-H, Kishimoto-N, Saito-A., Linkage analysis of a photoperiod-sensitive gene locus (Se-1) with RFLP markers in rice, Japan J Breed, 1993, 43(Suppl. 1), pp. 147-, [http://www.gramene.org/db/literature/pub_search?ref_id=6313 Gramene Literature]
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Okumoto-Y, Inoue-H, Tanisaka-T., Difference of the heading-time genes of a rice variety Taichung 65 from those of Japanese rice varieties, Toward enhanced and sustainable agricultural productivity in 2000's: breeding research and biotechnology. I. Taichung District Agricultural Improvement Station, Taiwan, R.O.C., 1994, (No volume provided), pp. 131-138, [http://www.gramene.org/db/literature/pub_search?ref_id=6317 Gramene Literature]
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Yokoo-M., Heading disturbance by long-day length treatment during reproductive stage in photoperiod-sensitive rice, Breed Sci, 1994, 44, pp. 67-70, [http://www.gramene.org/db/literature/pub_search?ref_id=5165 Gramene Literature]
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Ohshima-I, Kikuchi-F., Identification of a recessive inhibitor for photoperiod sensitivity gene, Se-1, in photoperiod-insensitive varieties of Indica type rice, Toward enhanced and sustainable agricultural productivity in 2000's: breeding research and biotechnology. I. Taichung District Agricultural Improvement Station, Taiwan, R.O.C., 1994, (No volume provided), pp. 93-100, [http://www.gramene.org/db/literature/pub_search?ref_id=6312 Gramene Literature]
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Tamura-K, Ohshima-I, Okada-K, Morooka-Y, Nomura-N, Namai-H, Kato-H, Ikeda-R, Kikuchi-F., Linkage analysis of a photoperiod-sensitive gene Se-1 locus with neighbouring loci in rice, Breed Sci, 1994, 44(Suppl. 1), pp. 213-, [http://www.gramene.org/db/literature/pub_search?ref_id=6382 Gramene Literature]
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Causse-M-A, Fulton-T-M, Cho-Y-G, Ahn-S-N, Chunwongse-J, Wu-K, Xiao-J, Yu-Z, Ronald-P-C, Harrington-S-E, Second-G, McCouch-S-R, Tanksley-S-D., Saturated molecular map of the rice genome based on an interspecific backcross population, Genetics, 1994, 138, pp. 1251-1274 (PMID:[http://www.ncbi.nlm.nih.gov:80/entrez/query.fcgi?cmd=Retrieve&db=PubMed&dopt=Abstract&list_uids=7896104 7896104]), [http://www.gramene.org/db/literature/pub_search?ref_id=456 Gramene Literature]
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Tanisaka-T, Takemori-N, Yabu-T, Egashira-H, Okumoto-Y, Yamagata-H., Two useful semidwarf genes in a short-culm mutant line HS90 of rice, Breed Sci, 1994, 44, pp. 397-403, [http://www.gramene.org/db/literature/pub_search?ref_id=5976 Gramene Literature]
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Tamura-K, Yano-M, Sasaki-T, Nomura-K, Namai-H, Kikuchi-F., Linkage analysis using RFLP for a photoperiod-sensitive gene Se-1 locus with neighboring loci in rice, Breed Sci, 1995, 45(Suppl. 1), pp. 82-, [http://www.gramene.org/db/literature/pub_search?ref_id=6383 Gramene Literature]
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Monna-L, Miyao-A, Zhong-H-S, Sasaki-T, Minobe-Y., Screening of RAPD markers linked to the photoperiod-sensitivity gene in rice chromosome 6 using bulked segregant analysis, DNA research :  an international journal for rapid publication of reports on genes and genomes, 1995, 2, pp. 101-106 (PMID:[http://www.ncbi.nlm.nih.gov:80/entrez/query.fcgi?cmd=Retrieve&db=PubMed&dopt=Abstract&list_uids=8581735 8581735]), [http://www.gramene.org/db/literature/pub_search?ref_id=2889 Gramene Literature]
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Okumoto-Y, Maekawa-M, Ichitani-K, Tanisaka-T., Complementary effect of a photoperiod sensitivity gene in Hokkaido rice varieties and that in a strong cold resistant rice variety Silewah, Breed Sci, 1996, 46:(Suppl. 1), pp. 85-, [http://www.gramene.org/db/literature/pub_search?ref_id=6318 Gramene Literature]
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Niwa-M, Terakado-K, Takeda-N., Effects of Se1 gene on basic vegetative growth of rice, IRRN, 1996, 21(2-3), pp. 19-, [http://www.gramene.org/db/literature/pub_search?ref_id=6307 Gramene Literature]
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Katayose-Y, Kuboki-Y, Kurata-N, Yano-M, Sasaki-T., Physical mapping of region containing a photoperiod sensitivity gene, Hd-1(Se-1), based on a fine scale linkage map, Breed Sci, 1996, 46(Suppl 2), pp. 53-, [http://www.gramene.org/db/literature/pub_search?ref_id=6232 Gramene Literature]
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Yano-M, Yoshiaki-H, Kuboki-Y, Lin-S-Y, Nagamura-Y, Kurata-N, Sasaki-T, Minobe-Y., QTL analysis as an aid to tagging genes that control heading time in rice, Rice Genetics, III. IRRI, Manila, Philippines. Proceedings of the Third International Rice Genetics Symposium, ed by G S Khush, 1996, (No volume provided), pp. 650-656, [http://www.gramene.org/db/literature/pub_search?ref_id=5124 Gramene Literature]
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Kikuchi-F., 3. Heading time and flowering, Science of the Rice Plant: Genetics. T.Matso, K.Hoshikawa (eds.), Nobunkyo, Tokyo., 1997, (No volume provided), pp. 359-367, [http://www.gramene.org/db/literature/pub_search?ref_id=10919 Gramene Literature]
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Yasuda-T, Okumoto-Y, Ikehashi-H., Analysis of complementary loci for delayed flowering in FREDACTEDP hybrid of Indica-Japonica crosses II. Identification of a complementary locus for Se-1, Breed Sci, 1997, 47 (Suppl. 1), pp. 40-, [http://www.gramene.org/db/literature/pub_search?ref_id=6435 Gramene Literature]
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Ichitani-K, Tanaka-T, Okumoto-Y, Tanisaka-T., Gene analysis of the rice cultivar Kasalath with special reference to two photoperiod sensitivity loci, E1 and Se-1, Breed Sci, 1997, 47(Suppl. 1), pp. 51-, [http://www.gramene.org/db/literature/pub_search?ref_id=6199 Gramene Literature]
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Yano-M, Sasaki-T., Genetic and molecular dissection of quantitative traits in rice, Plant molecular biology, 1997, 35, pp. 145-153 (PMID:[http://www.ncbi.nlm.nih.gov:80/entrez/query.fcgi?cmd=Retrieve&db=PubMed&dopt=Abstract&list_uids=9291968 9291968]), [http://www.gramene.org/db/literature/pub_search?ref_id=5125 Gramene Literature]
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Ohshima-I, Kikuchi-F, Nomura-H, Namai-H., Identification of a recessive inhibitor for photoperiod-sensitivity gene, Se-1, in rice, Harmonizing agricultural productivity and conservation of biodiversity: Breeding and ecology. Proceed. 8th SABRAO Congress and Annual Meeting of Korean Breed. Soc., 1997, (No volume provided), pp. 157-158, [http://www.gramene.org/db/literature/pub_search?ref_id=6314 Gramene Literature]
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Okumoto-Y, Ichitani-K, Inoue-H, Tanisaka-T., Location of the late heading-time gene locus E3, Breed Sci, 1997, 47(Suppl.1), pp. 31-31, [http://www.gramene.org/db/literature/pub_search?ref_id=3305 Gramene Literature]
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Ichitani-K, Okumoto-Y, Tanisaka-T., Photoperiod sensitivity gene of Se-1 locus found in photoperiod insensitive rice cultivars of the northern limit region of rice cultivation, Breed Sci, 1997, 47, pp. 145-152, [http://www.gramene.org/db/literature/pub_search?ref_id=5617 Gramene Literature]
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Okumoto-Y, Tanisaka-T., Trisomic analysis of a strong photoperiod-sensitivity gene E1 in rice (Oryza sativa L.), Euphytica, 1997, 95, pp. 301-307, [http://www.gramene.org/db/literature/pub_search?ref_id=3306 Gramene Literature]
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Tamura-K, Nomura-K, Namai-H, Kikuchi-F., Determination of the developmental stage in which Se-1 shows remarkable photoperiod sensitivity in rice, Breed Sci, 1998, 48(Suppl. 2), pp. 302-, [http://www.gramene.org/db/literature/pub_search?ref_id=6388 Gramene Literature]
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